Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs4885481 chr13:78235493 A/G 1.1E-5 132 15.7 35.37 42.18 KM Plot
TGCT rs4894430 chr3:172439951 A/G 1.49E-5 134 24.15 37.3 45.1 KM Plot
TGCT rs4894580 chr3:172438835 T/C 8.37E-5 134 25.33 37.42 45.83 KM Plot
TGCT rs4894590 chr3:172451942 A/T 8.14E-5 134 25.8 36.63 45.47 KM Plot
TGCT rs4964183 chr12:107042463 G/T 4.15E-8 131 46.77 45.1 27.93 KM Plot
TGCT rs4964184 chr12:107070425 A/T 5.59E-5 133 44.52 45.1 28.67 KM Plot
TGCT rs4964185 chr12:107070575 C/T 1.87E-10 134 42.1 48.12 27.93 KM Plot
TGCT rs4964186 chr12:107080235 C/T 5.07E-5 134 46.77 45.1 28.67 KM Plot
TGCT rs4964187 chr12:107080313 C/A 5.07E-5 134 46.77 45.1 28.67 KM Plot
TGCT rs4964479 chr12:107042578 A/G 3.53E-8 132 48.87 45.1 27.93 KM Plot
TGCT rs4964483 chr12:107099057 T/C 5.07E-5 134 46.77 45.1 28.67 KM Plot
TGCT rs4964485 chr12:107121952 A/G 0.000124 132 42.27 41.65 28.8 KM Plot
TGCT rs4964486 chr12:107140790 A/G 0.000113 133 42.27 45.1 28.8 KM Plot
TGCT rs499778 chr13:21849365 C/T 6.44E-7 132 46.3 35.73 14.42 KM Plot
TGCT rs509514 chr13:21839048 T/C 5.93E-7 132 46.3 36.7 14.42 KM Plot